Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs199637578 chr20:6028264 T/C 0 178 25.47 23.53 2.93 KM Plot
PCPG rs1998289 chr10:101491020 A/G 9.3E-5 178 23.48 29.62 17.88 KM Plot
PCPG rs1998290 chr10:101491236 G/A 9.93E-5 177 17.88 29.62 23.43 KM Plot
PCPG rs199939820 chr3:80592962 AT/A 0.000142 175 19.87 24.03 27.4 KM Plot
PCPG rs199967019 chr2:24335870 T/TCG 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs200071804 chr17:1410956 TCCC/T 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs200161277 chr16:71740172 C/CTATGT 9.25E-6 174 24.23 32.03 14.5 KM Plot
PCPG rs200189730 chr2:118667673 A/AT 1.6E-5 178 25.17 30.93 11.65 KM Plot
PCPG rs200291405 chr2:24335877 G/GT 0.000114 177 25.4 26.92 17.43 KM Plot
PCPG rs2004412 chr11:18158347 A/T 8.87E-5 176 27.23 23.48 8.33 KM Plot
PCPG rs200494253 chr2:118541216 C/T 1.67E-5 177 24.85 30.33 11.65 KM Plot
PCPG rs200518149 chr2:118524269 G/T 1.99E-5 174 25.08 30.63 11.65 KM Plot
PCPG rs200523802 chr3:195792272 C/CA 5.61E-8 170 24.5 29.43 15.35 KM Plot
PCPG rs200780987 chr2:118565973 C/T 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs200784236 chr16:56469739 T/TTAC 0.000204 177 25.17 26.97 36.37 KM Plot